Adam P. Arkin: search on Z-Library

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1

It’s a noisy business! Genetic regulation at the nanomolar scale

Harley H McAdams, Adam Arkin

Journal:

Trends in Genetics

Year:

1999

Language:

english

File:

PDF, 164 KB

english, 1999

2

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

Qi, Lei S., Larson, Matthew H., Gilbert, Luke A., Doudna, Jennifer A., Weissman, Jonathan S., Arkin, Adam P., Lim, Wendell A.

Journal:

Year:

2013

Language:

english

File:

PDF, 843 KB

english, 2013

3

CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification

Oakes, Benjamin L., Fellmann, Christof, Rishi, Harneet, Taylor, Kian L., Ren, Shawn M., Nadler, Dana C., Yokoo, Rayka, Arkin, Adam P., Doudna, Jennifer A., Savage, David F.

Journal:

Year:

2019

Language:

english

File:

PDF, 8.17 MB

english, 2019

4

SIMULATION OF PROKARYOTIC GENETIC CIRCUITS

McAdams, Harley H., Arkin, Adam

Journal:

Annual Review of Biophysics and Biomolecular Structure

Year:

1998

Language:

english

File:

PDF, 353 KB

english, 1998

5

The evolution of genetic regulatory systems in bacteria

McAdams, Harley H., Srinivasan, Balaji, Arkin, Adam P.

Journal:

Nature Reviews Genetics

Year:

2004

Language:

english

File:

PDF, 489 KB

english, 2004

6

Stochastic Mechanisms in Gene Expression

Harley H. McAdams and Adam Arkin

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.24 MB

english, 1997

7

KBase: The United States Department of Energy Systems Biology Knowledgebase

Arkin, Adam P, Cottingham, Robert W, Henry, Christopher S, Harris, Nomi L, Stevens, Rick L, Maslov, Sergei, Dehal, Paramvir, Ware, Doreen, Perez, Fernando, Canon, Shane, Sneddon, Michael W, Henderson,

Journal:

Nature Biotechnology

Year:

2018

Language:

english

File:

PDF, 688 KB

english, 2018

8

RNA processing enables predictable programming of gene expression

Qi, Lei, Haurwitz, Rachel E, Shao, Wenjun, Doudna, Jennifer A, Arkin, Adam P

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 743 KB

english, 2012

9

Precise and reliable gene expression via standard transcription and translation initiation elements

Mutalik, Vivek K, Guimaraes, Joao C, Cambray, Guillaume, Lam, Colin, Christoffersen, Marc Juul, Mai, Quynh-Anh, Tran, Andrew B, Paull, Morgan, Keasling, Jay D, Arkin, Adam P, Endy, Drew

Journal:

Year:

2013

Language:

english

File:

PDF, 1.67 MB

english, 2013

10

Genomics for environmental microbiology

Adam M Deutschbauer, Dylan Chivian, Adam P Arkin

Journal:

Current Opinion in Biotechnology

Year:

2006

Language:

english

File:

PDF, 199 KB

english, 2006

11

Gene regulation: Towards a circuit engineering discipline

Harley H McAdams, Adam Arkin

Journal:

Current Biology

Year:

2000

Language:

english

File:

PDF, 100 KB

english, 2000

12

Environmentally Controlled Invasion of Cancer Cells by Engineered Bacteria

J. Christopher Anderson, Elizabeth J. Clarke, Adam P. Arkin, Christopher A. Voigt

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 392 KB

english, 2006

13

Changes in microbial dynamics during long-term decomposition in tropical forests

DeAngelis, Kristen M., Chivian, Dylan, Fortney, Julian L., Arkin, Adam P., Simmons, Blake, Hazen, Terry C., Silver, Whendee L.

Journal:

Soil Biology and Biochemistry

Year:

2013

Language:

english

File:

PDF, 487 KB

english, 2013

14

Horizontal gene transfer and the evolution of transcriptional regulation inEscherichia coli

Morgan N Price, Paramvir S Dehal, Adam P Arkin

Journal:

Year:

2008

Language:

english

File:

PDF, 1.57 MB

english, 2008

15

A Method for Measuring First-Stage Soil Water Evaporation in the Field1

Arkin, G. F., Ritchie, J. T., Adams, J. E.

Journal:

Soil Science Society of America Journal

Year:

1974

Language:

english

File:

PDF, 127 KB

english, 1974

16

A versatile framework for microbial engineering using synthetic non-coding RNAs

Qi, Lei S., Arkin, Adam P.

Journal:

Nature Reviews Microbiology

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

17

Metabolomic data streaming for biology-dependent data acquisition

Rinehart, Duane, Johnson, Caroline H, Nguyen, Thomas, Ivanisevic, Julijana, Benton, H Paul, Lloyd, Jessica, Arkin, Adam P, Deutschbauer, Adam M, Patti, Gary J, Siuzdak, Gary

Journal:

Nature Biotechnology

Year:

2014

Language:

english

File:

PDF, 445 KB

english, 2014

18

Fermentation of hydrolysate detoxified by pervaporation through block copolymer membranes

Greer, Douglas R., Basso, Thalita P., Ibanez, Ana B., Bauer, Stefan, Skerker, Jeffrey M., Ozcam, A. Evren, Leon, Dacia, Shin, Chaeyoung, Arkin, Adam P., Balsara, Nitash P.

Journal:

Green Chemistry

Year:

2014

Language:

english

File:

PDF, 1020 KB

english, 2014

19

Current Protocols in Chemical Biology || Fluorescence Polarization (FP) Assays for Monitoring Peptide-Protein or Nucleic Acid-Protein Binding

Arkin, Adam P., Mahal, Lara, Romesberg, Floyd, Shah, Kavita, Shamu, Caroline, Thomas, Craig

Year:

2009

Language:

english

File:

PDF, 143 KB

english, 2009

20

Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae

Quarterman, Josh, Skerker, Jeffrey M., Feng, Xueyang, Liu, Ian Y., Zhao, Huimin, Arkin, Adam P., Jin, Yong-Su

Journal:

Journal of Biotechnology

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

21

Current Protocols in Chemical Biology || Copper-Catalyzed Azide-Alkyne Click Chemistry for Bioconjugation

Arkin, Adam P., Mahal, Lara, Romesberg, Floyd, Shah, Kavita, Shamu, Caroline, Thomas, Craig

Year:

2009

Language:

english

File:

PDF, 144 KB

english, 2009

22

Deciphering microbial interactions in synthetic human gut microbiome communities

Venturelli, Ophelia S, Carr, Alex C, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P

Journal:

Molecular Systems Biology

Year:

2018

Language:

english

File:

PDF, 2.69 MB

english, 2018

23

Improved Method for Estimating Reaction Rates During Push-Pull Tests

Paradis, Charles J., Dixon, Emma R., Lui, Lauren M., Arkin, Adam P., Parker, Jack C., Istok, Jonathan D., Perfect, Edmund, McKay, Larry D., Hazen, Terry C.

Journal:

Year:

2018

Language:

english

File:

PDF, 681 KB

english, 2018

24

Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli

Cambray, Guillaume, Guimaraes, Joao C, Arkin, Adam Paul

Journal:

Nature Biotechnology

Year:

2018

Language:

english

File:

PDF, 7.20 MB

english, 2018

25

Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria

Mutalik, Vivek K., Novichkov, Pavel S., Price, Morgan N., Owens, Trenton K., Callaghan, Mark, Carim, Sean, Deutschbauer, Adam M., Arkin, Adam P.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.65 MB

english, 2019

26

Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

Price, Morgan N., Zane, Grant M., Kuehl, Jennifer V., Melnyk, Ryan A., Wall, Judy D., Deutschbauer, Adam M., Arkin, Adam P.

Journal:

Year:

2019

Language:

english

File:

PDF, 209 KB

english, 2019

27

Redefining fundamental concepts of transcription initiation in bacteria

MejÃa-Almonte, Citlalli, Busby, Stephen J. W., Wade, Joseph T., van Helden, Jacques, Arkin, Adam P., Stormo, Gary D., Eilbeck, Karen, Palsson, Bernhard O., Galagan, James E., Collado-Vides, Julio

Journal:

Nature Reviews Genetics

Year:

2020

File:

PDF, 1.94 MB

2020

28

A tightly regulated inducible expression system utilizing the fim inversion recombination switch

Timothy S. Ham, Sung Kuk Lee, Jay D. Keasling, Adam P. Arkin

Journal:

Biotechnology and Bioengineering

Year:

2006

Language:

english

File:

PDF, 124 KB

english, 2006

29

Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism

Yinjie J. Tang, Hector Garcia Martin, Paramvir S. Dehal, Adam Deutschbauer, Xavier Llora, Adam Meadows, Adam Arkin, Jay. D. Keasling

Journal:

Biotechnology and Bioengineering

Year:

2009

Language:

english

File:

PDF, 368 KB

english, 2009

30

Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations

Yinjie J. Tang, Hector Garcia Martin, Adam Deutschbauer, Xueyang Feng, Rick Huang, Xavier Llora, Adam Arkin, Jay D. Keasling

Journal:

Biotechnology Progress

Year:

2009

Language:

english

File:

PDF, 249 KB

english, 2009

31

Efficient stochastic sensitivity analysis of discrete event systems

Sergey Plyasunov, Adam P. Arkin

Journal:

Journal of Computational Physics

Year:

2007

Language:

english

File:

PDF, 305 KB

english, 2007

32

Diversity in times of adversity: probabilistic strategies in microbial survival games

Denise M. Wolf, Vijay V. Vazirani, Adam P. Arkin

Journal:

Journal of Theoretical Biology

Year:

2005

Language:

english

File:

PDF, 1.12 MB

english, 2005

33

A small mass spectrometer system for in situ gas analysis

C Richard Arkin, Charles H Curley, David P Floyd, Guy R Naylor, William D Haskell, Mike Blalock, Timothy P Griffin, Duke W Follistein, Fredrick W Adams, J Andres Diaz

Journal:

TrAC Trends in Analytical Chemistry

Year:

2004

Language:

english

File:

PDF, 196 KB

english, 2004

34

Evaluation of small mass spectrometer systems for permanent gas analysis

C.Richard Arkin, Timothy P. Griffin, Andrew K. Ottens, Jorge A. Diaz, Duke W. Follistein, Fredrick W. Adams, William R. Helms

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2002

Language:

english

File:

PDF, 283 KB

english, 2002

35

BglBricks: A flexible standard for biological part assembly

JChristopher Anderson, John E Dueber, Mariana Leguia, Gabriel C Wu, Jonathan A Goler, Adam P Arkin, Jay D Keasling

Journal:

Journal of Biological Engineering

Year:

2010

Language:

english

File:

PDF, 811 KB

english, 2010

36

Structure of the Transmembrane Cysteine Residues in Phospholamban

I.T. Arkin, P.D. Adams, A.T. Brünger, S. Aimoto, D.M. Engelman, S.O. Smith

Journal:

Journal of Membrane Biology

Year:

1997

Language:

english

File:

PDF, 728 KB

english, 1997

37

The Histidine Operon Is Ancient

Morgan N. Price, Eric J. Alm, Adam P. Arkin

Journal:

Journal of Molecular Evolution

Year:

2006

Language:

english

File:

PDF, 251 KB

english, 2006

38

A microbial modified prisoner's dilemma game: how frequency-dependent selection can lead to random phase variation

Denise M. Wolf, Vijay V. Vazirani, Adam P. Arkin

Journal:

Journal of Theoretical Biology

Year:

2005

Language:

english

File:

PDF, 383 KB

english, 2005

39

Synthetic cell biology

Journal:

Current Opinion in Biotechnology

Year:

2001

Language:

english

File:

PDF, 67 KB

english, 2001

40

Control, exploitation and tolerance of intracellular noise

Rao, Christopher V., Wolf, Denise M., Arkin, Adam P.

Journal:

Year:

2002

Language:

english

File:

PDF, 540 KB

english, 2002

41

Overview of the Alliance for Cellular Signaling

Gilman, Alfred G., Simon, Melvin I., Bourne, Henry R., Harris, Bruce A., Long, Rochelle, Ross, Elliott M., Stull, James T., Taussig, Ronald, Bourne, Henry R., Arkin, Adam P.

Journal:

Year:

2002

Language:

english

File:

PDF, 75 KB

english, 2002

42

erratum: Control, exploitation and tolerance of intracellular noise

Rao, Christopher V., Wolf, Denise M., Arkin, Adam P.

Journal:

Year:

2003

Language:

english

File:

PDF, 179 KB

english, 2003

43

Regulation of transcription by unnatural amino acids

Liu, Chang C, Qi, Lei, Yanofsky, Charles, Arkin, Adam P

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 429 KB

english, 2011

44

Setting the standard in synthetic biology

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 360 KB

english, 2008

45

Applications of Imaging Spectroscopy in Molecular Biology II. Colony Screening Based on Absorption Spectra

Arkin, Adam P., Goldman, Ellen R., Robles, Steven J., Goddard, Christine A., Coleman, William J., Yang, Mary M., Youvan, Douglas C.

Journal:

Year:

1990

File:

PDF, 590 KB

1990

46

Deviant effects in molecular reaction pathways

Samoilov, Michael S, Arkin, Adam P

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 712 KB

english, 2006

47

Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban

Adams, Paul D., Arkin, Isaiah T., Engelman, Donald M., Brünger, Axel T.

Journal:

Natural Structural Biology

Year:

1995

File:

PDF, 1.42 MB

1995

48

Contextualizing context for synthetic biology – identifying causes of failure of synthetic biological systems

Stefano Cardinale, Prof. Adam Paul Arkin

Journal:

Biotechnology Journal

Year:

2012

Language:

english

File:

PDF, 493 KB

english, 2012

49

The old switcheroo: new tricks revealed in ‘Phage Lambda Revisited’

Adam Paul Arkin, John Doyle

Journal:

Current Biology

Year:

2004

Language:

english

File:

PDF, 64 KB

english, 2004

50

Simulating cell biology

Steven S. Andrews, Adam P. Arkin

Journal:

Current Biology

Year:

2006

Language:

english

File:

PDF, 310 KB

english, 2006